Veterinärmedizinische Universität Wien Forschungsinformationssystem VetDoc

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Schlötterer Christian,

** = Publikationen gelistet in SCI/SSCI/Pubmed

2021

Zeitschriftenaufsatz

** Burny, C; Nolte, V; Dolezal, M; Schlötterer, C (2021): Highly parallel genomic selection response in replicated Drosophila melanogaster populations with reduced genetic variation. Genome Biol Evol. 2021; 13(11):evab239
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** Fischer, C; Koblmüller, S; Börger, C; Michelitsch, G; Trajanoski, S; Schlötterer, C; Guelly, C; Thallinger, GG; Sturmbauer, C (2021): Genome sequences of Tropheus moorii and Petrochromis trewavasae, two eco-morphologically divergent cichlid fishes endemic to Lake Tanganyika. Sci Rep. 2021; 11(1):4309
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** Hsu, SK; Belmouaden, C; Nolte, V; Schlötterer, C (2021): Parallel gene expression evolution in natural and laboratory evolved populations. Mol Ecol. 2021 30 (4) 884-894.
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** Lai, WY; Schlötterer, C (2021): Evolution of phenotypic variance in response to a novel hot environment. Mol Ecol. 2021;
[Article in Press]

** Langmüller, AM; Dolezal, M; Schlötterer, C (2021): Fine mapping without phenotyping: Identification of selection targets in secondary Evolve and Resequence experiments. Genome Biol Evol. 2021; 13(8):evab154
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** Otte, KA; Nolte, V; Mallard, F; Schlötterer, C (2021): The genetic architecture of temperature adaptation is shaped by population ancestry and not by selection regime. Genome Biol. 2021; 22(1):211
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** Otte, KA; Schlötterer, C (2021): Detecting selected haplotype blocks in Evolve and Resequence experiments. Mol Ecol Resour. 2021 21 (1) 93-109.

Sonstige Veröffentlichung

Burny, C; Nolte, V; Dolezal, M; Schlötterer, C (2021): Genome-wide selection signatures reveal widespread synergistic effects of culture conditions and temperature stress in Drosophila melanogaster. biorxiv doi: 10.1101/2021.11.09.467935
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Hsu, S-K; Lai, W-Y; Novak, J; Lehner, F; Jaksic, AM; Versace, E; Schlötterer, C (2021): Pre- and post-mating reproductive isolation evolve independently during rapid adaptation to high temperature. biorxiv doi: 10.1101/2021.11.08.467720
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Kofler, R; Nolte, V; Schloetterer, C (2021): The transposition rate has little influence on equilibrium copy numbers of the P-element. biorxiv doi: 10.1101/2021.09.20.461050
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2020

Zeitschriftenaufsatz

** Barghi, N; Hermisson, J; Schlötterer, C (2020): Polygenic adaptation: a unifying framework to understand positive selection. Nat Rev Genet. 2020 21 (12) 769-781.

** Barghi, N; Schlötterer, C (2020): Distinct patterns of selective sweep and polygenic adaptation in evolve and re-sequence studies. Genome Biol Evol. 2020; 12(6):890-904
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** Burny, C; Nolte, V; Nouhaud, P; Dolezal, M; Schlötterer, C (2020): Secondary evolve and re-sequencing: an experimental confirmation of putative selection targets without phenotyping. Genome Biol Evol. 2020; 12(3):151-159
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** Hsu, SK; Jakšić, AM; Nolte, V; Lirakis, M; Kofler, R; Barghi, N; Versace, E; Schlötterer, C (2020): Rapid sex-specific adaptation to high temperature in Drosophila . Elife. 2020; 9:
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** Jakšić, AM; Karner, J; Nolte, V; Hsu, SK; Barghi, N; Mallard, F; Otte, KA; Svečnjak, L; Senti, KA; Schlötterer, C (2020): Neuronal function and dopamine signaling evolve at high temperature in Drosophila. Mol Biol Evol. 2020; 37(9):2630-2640

** Langmüller, A; Schlötterer, C (2020): Low concordance of short-termand long-term selection responses in experimental Drosophila populations. Mol Ecol. 2020 29 (18) 3466-3475.
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** Langmüller, AM; Nolte, V; Galagedara, R; Poupardin, R; Dolezal, M; Schlötterer, C (2020): Fitness effects for Ace insecticide resistance mutations are determined by ambient temperature. BMC Biol. 2020; 18(1):157
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** Leung, K; Ras, E; Ferguson, KB; Ariëns, S; Babendreier, D; Bijma, P; Bourtzis, K; Brodeur, J; Bruins, MA; Centurión, A; Chattington, SR; Chinchilla-Ramírez, M; Dicke, M; Fatouros, NE; González-Cabrera, J [and 23 others] (2020): Next-generation biological control: the need for integrating genetics and genomics. Biol Rev. 2020 95 (6) 1838-1854.
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** Mallard, F; Nolte, V; Schlötterer, C (2020): The evolution of phenotypic plasticity in response to temperature stress. Genome Biol Evol. 2020; 12(12):2429-2440
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** Mazzucco, R; Nolte, V; Vijayan, T; Schlötterer, C (2020): Long-Term Dynamics Among Wolbachia Strains During Thermal Adaptation of Their Drosophila melanogaster Hosts. Front Genet. 2020; 11:482
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2019

** Barghi, N; Schlötterer, C (2019): Shifting the paradigm in Evolve and Resequence studies: From analysis of single nucleotide polymorphisms to selected haplotype blocks. Mol Ecol. 2019; 28(3):521-524
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** Barghi, N; Tobler, R; Nolte, V; Jakšić, AM; Mallard, F; Otte, KA; Dolezal, M; Taus, T; Kofler, R; Schlötterer, C (2019): Genetic redundancy fuels polygenic adaptation in Drosophila. PLoS Biol. 2019; 17(2):e3000128
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** Felkel, S; Vogl, C; Rigler, D; Dobretsberger, V; Chowdhary, BP; Distl, O; Fries, R; Jagannathan, V; Janečka, JE; Leeb, T; Lindgren, G; McCue, M; Metzger, J; Neuditschko, M; Rattei, T [and 10 others] (2019): The horse Y chromosome as an informative marker for tracing sire lines. Sci Rep. 2019; 9(1):6095
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** Howie, JM; Mazzucco, R; Taus, T; Nolte, V; Schlötterer, C (2019): DNA Motifs Are Not General Predictors of Recombination in Two Drosophila Sister Species. Genome Biol Evol. 2019; 11(4):1345-1357
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** Hsu, SK; Jakšić, AM; Nolte, V; Barghi, N; Mallard, F; Otte, KA; Schlötterer, C (2019): A 24 h Age Difference Causes Twice as Much Gene Expression Divergence as 100 Generations of Adaptation to a Novel Environment. Genes (Basel). 2019; 10(2): 89.
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** Vlachos, C; Burny, C; Pelizzola, M; Borges, R; Futschik, A; Kofler, R; Schlötterer, C (2019): Benchmarking software tools for detecting and quantifying selection in evolve and resequencing studies. Genome Biol. 2019; 20(1):169
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2018

** Endler, L; Gibert, JM; Nolte, V; Schlötterer, C (2018): Pleiotropic effects of regulatory variation in tan result in correlation of two pigmentation traits in Drosophila melanogaster. Mol Ecol 27(16): 3207-3218.
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** Fabian, DK; Garschall, K; Klepsatel, P; Santos-Matos, G; Sucena, É; Kapun, M; Lemaitre, B; Schlötterer, C; Arking, R; Flatt, T (2018): Evolution of longevity improves immunity in Drosophila . Evol Lett. 2018; 2(6):567-579
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** Faria, VG; Martins, NE; Schlötterer, C; Sucena, É (2018): Readapting to DCV Infection without Wolbachia: Frequency Changes of Drosophila Antiviral Alleles Can Replace Endosymbiont Protection. Genome Biol Evol. 2018; 10(7):1783-1791
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** Felkel, S; Vogl, C; Rigler, D; Jagannathan, V; Leeb, T; Fries, R; Neuditschko, M; Rieder, S; Velie, B; Lindgren, G; Rubin, CJ; Schlötterer, C; Rattei, T; Brem, G; Wallner, B (2018): Asian horses deepen the MSY phylogeny. Anim Genet. 2018; 49(1):90-93

** Gómez-Sánchez, D; Schlötterer, C (2018): ReadTools: A universal toolkit for handling sequence data from different sequencing platforms. Mol Ecol Resour. 2018; 18(3):676-680

** Kofler, R; Senti, KA; Nolte, V; Tobler, R; Schlötterer, C (2018): Molecular dissection of a natural transposable element invasion. Genome Res. 2018; 28(6):824-835
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** Lirakis, M; Dolezal, M; Schlötterer, C (2018): Redefining reproductive dormancy in Drosophila as a general stress response to cold temperatures. J Insect Physiol. 2018; 107:175-185
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** Mallard, F; Jakšić, AM; Schlötterer, C (2018): Contesting the evidence for non-adaptive plasticity. Nature. 2018; 555(7698):E21-E22

** Mallard, F; Nolte, V; Tobler, R; Kapun, M; Schlötterer, C (2018): A simple genetic basis of adaptation to a novel thermal environment results in complex metabolic rewiring in Drosophila. Genome Biol. 2018; 19(1):119
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** Nouhaud, P; Mallard, F; Poupardin, R; Barghi, N; Schlötterer, C (2018): High-throughput fecundity measurements in Drosophila. Sci Rep. 2018; 8(1):4469
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2017

** Barghi, N; Tobler, R; Nolte, V; Schlötterer, C (2017): Drosophila simulans: A Species with Improved Resolution in Evolve and Resequence Studies. G3 (Bethesda). 2017; 7(7):2337-2343
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** Franssen, SU; Barton, NH; Schlötterer, C (2017): Reconstruction of Haplotype-Blocks Selected during Experimental Evolution. Mol Biol Evol. 2017; 34(1):174-184

** Franssen, SU; Kofler, R; Schlötterer, C (2017): Uncovering the genetic signature of quantitative trait evolution with replicated time series data. Heredity (Edinb). 2017; 118(1):42-51
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** Gibert, JM; Blanco, J; Dolezal, M; Nolte, V; Peronnet, F; Schlötterer, C (2017): Strong epistatic and additive effects of linked candidate SNPs for Drosophila pigmentation have implications for analysis of genome-wide association studies results. Genome Biol. 2017; 18(1):126
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** Iranmehr, A; Akbari, A; Schlötterer, C; Bafna, V (2017): Clear: Composition of Likelihoods for Evolve and Resequence Experiments. Genetics. 2017; 206(2):1011-1023
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** Jakšić, AM; Kofler, R; Schlötterer, C (2017): Regulation of transposable elements: Interplay between TE-encoded regulatory sequences and host-specific trans-acting factors in Drosophila melanogaster. Mol Ecol. 2017; 26(19):5149-5159

** Otte, KA; Schlötterer, C (2017): Polymorphism-aware protein databases - a prerequisite for an unbiased proteomic analysis of natural populations. Mol Ecol Resour. 2017; 17(6):1148-1155

** Schou, MF; Loeschcke, V; Bechsgaard, J; Schlötterer, C; Kristensen, TN (2017): Unexpected high genetic diversity in small populations suggests maintenance by associative overdominance. Mol Ecol. 2017; 26(23):6510-6523

** Taus, T; Futschik, A; Schlötterer, C (2017): Quantifying Selection with Pool-Seq Time Series Data. Mol Biol Evol. 2017; 34(11):3023-3034
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** Tobler, R; Nolte, V; Schlötterer, C (2017): High rate of translocation-based gene birth on the Proc Natl Acad Sci U S A. 2017; 114(44):11721-11726
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** Wallner, B; Palmieri, N; Vogl, C; Rigler, D; Bozlak, E; Druml, T; Jagannathan, V; Leeb, T; Fries, R; Tetens, J; Thaller, G; Metzger, J; Distl, O; Lindgren, G; Rubin, CJ [and 7 others] (2017): Y Chromosome Uncovers the Recent Oriental Origin of Modern Stallions. Curr Biol. 2017; 27(13):2029-2035.e5

2016

** Bukowicki, M; Franssen, SU; Schlötterer, C (2016): High rates of phasing errors in highly polymorphic species with low levels of linkage disequilibrium. Mol Ecol Resour. 2016; 16(4):874-882
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** Endler, L; Betancourt, AJ; Nolte, V; Schlötterer, C (2016): Reconciling Differences in Pool-GWAS Between Populations: A Case Study of Female Abdominal Pigmentation in Drosophila melanogaster. Genetics. 2016; 202(2):843-855
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** Faria, VG; Martins, NE; Magalhães, S; Paulo, TF; Nolte, V; Schlötterer, C; Sucena, É; Teixeira, L (2016): Drosophila Adaptation to Viral Infection through Defensive Symbiont Evolution. PLoS Genet. 2016; 12(9):e1006297
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** Hill, T; Schlötterer, C; Betancourt, AJ (2016): Hybrid Dysgenesis in Drosophila simulans Associated with a Rapid Invasion of the P-Element. PLoS Genet. 2016; 12(3):e1005920
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** Hill, T; Schlötterer, C; Betancourt, AJ (2016): Correction: Hybrid Dysgenesis in Drosophila simulans Associated with a Rapid Invasion of the P-Element. PLoS Genet. 2016; 12(5):e1006058

** Jakšić, AM; Schlötterer, C (2016): The Interplay of Temperature and Genotype on Patterns of Alternative Splicing in Drosophila melanogaster. Genetics. 2016; 204(1):315-325
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** Jónás, Á; Taus, T; Kosiol, C; Schlötterer, C; Futschik, A (2016): Estimating the Effective Population Size from Temporal Allele Frequency Changes in Experimental Evolution. Genetics. 2016; 204(2):723-735
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** Kofler, R; Gómez-Sánchez, D; Schlötterer, C (2016): PoPoolationTE2: Comparative Population Genomics of Transposable Elements Using Pool-Seq. Mol Biol Evol. 2016; 33(10):2759-2764
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** Kofler, R; Langmüller, AM; Nouhaud, P; Otte, KA; Schlötterer, C (2016): Suitability of Different Mapping Algorithms for Genome-Wide Polymorphism Scans with Pool-Seq Data. G3 (Bethesda). 2016; 6(11):3507-3515
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** Kofler, R; Nolte, V; Schlötterer, C (2016): The impact of library preparation protocols on the consistency of allele frequency estimates in Pool-Seq data. Mol Ecol Resour. 2016; 16(1):118-122
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** Nouhaud, P; Tobler, R; Nolte, V; Schlötterer, C (2016): Ancestral population reconstitution from isofemale lines as a tool for experimental evolution. Ecol Evol. 2016; 6(20):7169-7175
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** Novikova, PY; Hohmann, N; Nizhynska, V; Tsuchimatsu, T; Ali, J; Muir, G; Guggisberg, A; Paape, T; Schmid, K; Fedorenko, OM; Holm, S; Säll, T; Schlötterer, C; Marhold, K; Widmer, A [and 6 others] (2016): Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism. Nat Genet. 2016; 48(9):1077-1082
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** Schlötterer, C; Kofler, R; Versace, E; Tobler, R; Franssen, SU (2016): Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation. Heredity (Edinb). 2016; 116(2):248
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Originalbeitrag in Sammelwerk

Schlötterer, C (2016): Simple Repeats. IN: Cooper, DN [Hrsg.]: eLS. UK, Wiley, pp. 1-4. ISBN: 9780470015902.

2015

Zeitschriftenaufsatz

** Arthofer, W; Banbury, BL; Carneiro, M; Cicconardi, F; Duda, TF; Harris, RB; Kang, DS; Leaché, AD; Nolte, V; Nourisson, C; Palmieri, N; Schlick-Steiner, BC; Schlötterer, C; Sequeira, F; Sim, C [and 3 others] (2015): Genomic resources notes accepted 1 August 2014-30 September 2014. Mol Ecol Resour. 2015; 15(1):228-229

** Chen, J; Nolte, V; Schlötterer, C (2015): Temperature-Related Reaction Norms of Gene Expression: Regulatory Architecture and Functional Implications. Mol Biol Evol. 2015; 32(9):2393-2402
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** Chen, J; Nolte, V; Schlötterer, C (2015): Temperature stress mediates decanalization and dominance of gene expression in Drosophila melanogaster. PLoS Genet. 2015; 11(2):e1004883
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** Fabian, DK; Lack, JB; Mathur, V; Schlötterer, C; Schmidt, PS; Pool, JE; Flatt, T (2015): Spatially varying selection shapes life history clines among populations of Drosophila melanogaster from sub-Saharan Africa. J Evol Biol. 2015; 28(4):826-840
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** Franssen, SU; Nolte, V; Tobler, R; Schlötterer, C (2015): Patterns of linkage disequilibrium and long range hitchhiking in evolving experimental Drosophila melanogaster populations. Mol Biol Evol. 2015; 32(2):495-509
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** Kofler, R; Hill, T; Nolte, V; Betancourt, AJ; Schlötterer, C (2015): The recent invasion of natural Drosophila simulans populations by the P-element. Proc Natl Acad Sci U S A. 2015; 112(21):6659-6663
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** Kofler, R; Nolte, V; Schlötterer, C (2015): Tempo and Mode of Transposable Element Activity in Drosophila. PLoS Genet. 2015; 11(7):e1005406
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** Palmieri, N; Nolte, V; Chen, J; Schlötterer, C (2015): Genome assembly and annotation of a Drosophila simulans strain from Madagascar. Mol Ecol Resour. 2015; 15(2):372-381

** Schlötterer, C (2015): Genes from scratch--the evolutionary fate of de novo genes. Trends Genet. 2015; 31(4):215-219
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** Schlötterer, C; Kofler, R; Versace, E; Tobler, R; Franssen, SU (2015): Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation. Heredity (Edinb). 2015; 114(5):431-440
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** Tanaka, KM; Hopfen, C; Herbert, MR; Schlötterer, C; Stern, DL; Masly, JP; McGregor, AP; Nunes, MD (2015): Genetic architecture and functional characterization of genes underlying the rapid diversification of male external genitalia between Drosophila simulans and Drosophila mauritiana. Genetics. 2015; 200(1):357-369
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** Terhorst, J; Schlötterer, C; Song, YS (2015): Multi-locus analysis of genomic time series data from experimental evolution. PLoS Genet. 2015; 11(4):e1005069
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** Tobler, R; Hermisson, J; Schlötterer, C (2015): Parallel trait adaptation across opposing thermal environments in experimental Drosophila melanogaster populations. Evolution. 2015; 69(7):1745-1759

Publizierter (zitierfähiger) Beitrag für wissenschaftliche Veranstaltung in Proceedings (A2)

Thallinger, GG; Fischer, C; Trajanoski, S; Gülly, C; Schlötterer, C; Sturmbauer, C (2015): Genomic sequencing of two members of the eco-morphologically highly diverse Lake Tanganyika cichlid tribe Tropheini. 132--108th Annual meeting of the German Zoological Society; SEP 09-13, 2015; Graz, AUSTRIA.

2014

Zeitschriftenaufsatz

** Kapun, M; van Schalkwyk, H; McAllister, B; Flatt, T; Schlötterer, C (2014): Inference of chromosomal inversion dynamics from Pool-Seq data in natural and laboratory populations of Drosophila melanogaster. Mol Ecol. 2014; 23(7):1813-1827
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** Kofler, R; Schlötterer, C (2014): A guide for the design of evolve and resequencing studies. Mol Biol Evol. 2014; 31(2):474-483
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** Marek, A; Ballmann, MZ; Kosiol, C; Harrach, B; Schlötterer, C; Hess, M (2014): Whole-genome sequences of two turkey adenovirus types reveal the existence of two unknown lineages that merit the establishment of novel species within the genus Aviadenovirus. J Gen Virol. 2014; 95(Pt 1):156-170

** Marek, A; Kaján, GL; Kosiol, C; Harrach, B; Schlötterer, C; Hess, M (2014): Complete genome sequences of pigeon adenovirus 1 and duck adenovirus 2 extend the number of species within the genus Aviadenovirus. Virology. 2014; 462-463:107-114

** Martins, NE; Faria, VG; Nolte, V; Schlötterer, C; Teixeira, L; Sucena, É; Magalhães, S (2014): Host adaptation to viruses relies on few genes with different cross-resistance properties. Proc Natl Acad Sci U S A. 2014; 111(16):5938-5943
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** Palmieri, N; Kosiol, C; Schlötterer, C (2014): The life cycle of Drosophila orphan genes. Elife. 2014; 3:e01311
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** Schlötterer, C; Tobler, R; Kofler, R; Nolte, V (2014): Sequencing pools of individuals - mining genome-wide polymorphism data without big funding. Nat Rev Genet. 2014; 15(11):749-763

** Schou, MF; Kristensen, TN; Kellermann, V; Schlötterer, C; Loeschcke, V (2014): A Drosophila laboratory evolution experiment points to low evolutionary potential under increased temperatures likely to be experienced in the future. J Evol Biol. 2014; 27(9):1859-1868

** Tobler, R; Franssen, SU; Kofler, R; Orozco-Terwengel, P; Nolte, V; Hermisson, J; Schlötterer, C (2014): Massive habitat-specific genomic response in D. melanogaster populations during experimental evolution in hot and cold environments. Mol Biol Evol. 2014; 31(2):364-375
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** Versace, E; Nolte, V; Pandey, RV; Tobler, R; Schlötterer, C (2014): Experimental evolution reveals habitat-specific fitness dynamics among Wolbachia clades in Drosophila melanogaster. Mol Ecol. 2014; 23(4):802-814
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2013

** Arif, S; Hilbrant, M; Hopfen, C; Almudi, I; Nunes, MD; Posnien, N; Kuncheria, L; Tanaka, K; Mitteroecker, P; Schlötterer, C; McGregor, AP (2013): Genetic and developmental analysis of differences in eye and face morphology between Drosophila simulans and Drosophila mauritiana. Evol Dev. 2013; 15(4):257-267
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** Arif, S; Murat, S; Almudi, I; Nunes, MD; Bortolamiol-Becet, D; McGregor, NS; Currie, JM; Hughes, H; Ronshaugen, M; Sucena, É; Lai, EC; Schlötterer, C; McGregor, AP (2013): Evolution of mir-92a underlies natural morphological variation in Drosophila melanogaster. Curr Biol. 2013; 23(6):523-528
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** Bastide, H; Betancourt, A; Nolte, V; Tobler, R; Stöbe, P; Futschik, A; Schlötterer, C (2013): A genome-wide, fine-scale map of natural pigmentation variation in Drosophila melanogaster. PLoS Genet. 2013; 9(6):e1003534
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** Boitard, S; Kofler, R; Françoise, P; Robelin, D; Schlötterer, C; Futschik, A (2013): Pool-hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples. Mol Ecol Resour. 2013; 13(2):337-340
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** De Maio, N; Holmes, I; Schlötterer, C; Kosiol, C (2013): Estimating empirical codon hidden Markov models. Mol Biol Evol. 2013; 30(3):725-736
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** De Maio, N; Schlötterer, C; Kosiol, C (2013): Linking great apes genome evolution across time scales using polymorphism-aware phylogenetic models. Mol Biol Evol. 2013; 30(10):2249-2262
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** Fischer, C; Koblmüller, S; Gülly, C; Schlötterer, C; Sturmbauer, C; Thallinger, GG (2013): Complete mitochondrial DNA sequences of the threadfin cichlid (Petrochromis trewavasae) and the blunthead cichlid (Tropheus moorii) and patterns of mitochondrial genome evolution in cichlid fishes. PLoS One. 2013; 8(6):e67048
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** Fonseca, NA; Morales-Hojas, R; Reis, M; Rocha, H; Vieira, CP; Nolte, V; Schlötterer, C; Vieira, J (2013): Drosophila americana as a model species for comparative studies on the molecular basis of phenotypic variation. Genome Biol Evol. 2013; 5(4):661-679
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** Klepsatel, P; Gáliková, M; De Maio, N; Huber, CD; Schlötterer, C; Flatt, T (2013): Variation in thermal performance and reaction norms among populations of Drosophila melanogaster. Evolution. 2013; 67(12):3573-3587

** Klepsatel, P; Gáliková, M; De Maio, N; Ricci, S; Schlötterer, C; Flatt, T (2013): Reproductive and post-reproductive life history of wild-caught Drosophila melanogaster under laboratory conditions. J Evol Biol. 2013; 26(7):1508-1520

** Marek, A; Kosiol, C; Harrach, B; Kaján, GL; Schlötterer, C; Hess, M (2013): The first whole genome sequence of a Fowl adenovirus B strain enables interspecies comparisons within the genus Aviadenovirus. Vet Microbiol. 2013; 166(1-2):250-256

** Nolte, V; Pandey, RV; Kofler, R; Schlötterer, C (2013): Genome-wide patterns of natural variation reveal strong selective sweeps and ongoing genomic conflict in Drosophila mauritiana. Genome Res. 2013; 23(1):99-110
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** Nunes, MD; Arif, S; Schlötterer, C; McGregor, AP (2013): A perspective on micro-evo-devo: progress and potential. Genetics. 2013; 195(3):625-634
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** Nunes, MD; Dolezal, M; Schlötterer, C (2013): Extensive paternal mtDNA leakage in natural populations of Drosophila melanogaster. Mol Ecol. 2013; 22(8):2106-2117
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** Pandey, RV; Franssen, SU; Futschik, A; Schlötterer, C (2013): Allelic imbalance metre (Allim), a new tool for measuring allele-specific gene expression with RNA-seq data. Mol Ecol Resour. 2013; 13(4):740-745
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** Pandey, RV; Schlötterer, C (2013): DistMap: a toolkit for distributed short read mapping on a Hadoop cluster. PLoS One. 2013; 8(8):e72614
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** Suvorov, A; Nolte, V; Pandey, RV; Franssen, SU; Futschik, A; Schlötterer, C (2013): Intra-specific regulatory variation in Drosophila pseudoobscura. PLoS One. 2013; 8(12):e83547
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2012

** Boitard, S; Schlötterer, C; Nolte, V; Pandey, RV; Futschik, A (2012): Detecting selective sweeps from pooled next-generation sequencing samples. Mol Biol Evol. 2012; 29(9):2177-2186
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** Fabian, DK; Kapun, M; Nolte, V; Kofler, R; Schmidt, PS; Schlötterer, C; Flatt, T (2012): Genome-wide patterns of latitudinal differentiation among populations of Drosophila melanogaster from North America. Mol Ecol. 2012; 21(19):4748-4769
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** Farlow, A; Dolezal, M; Hua, L; Schlötterer, C (2012): The genomic signature of splicing-coupled selection differs between long and short introns. Mol Biol Evol. 2012; 29(1):21-24
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** Fonseca, NA; Vieira, CP; Schlötterer, C; Vieira, J (2012): The DAIBAM MITE element is involved in the origin of one fixed and two polymorphic Drosophila virilis phylad inversions. Fly (Austin). 2012; 6(2):71-74

** Kofler, R; Betancourt, AJ; Schlötterer, C (2012): Sequencing of pooled DNA samples (Pool-Seq) uncovers complex dynamics of transposable element insertions in Drosophila melanogaster. PLoS Genet. 2012; 8(1):e1002487
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** Kofler, R; Schlötterer, C (2012): Gowinda: unbiased analysis of gene set enrichment for genome-wide association studies. Bioinformatics. 2012; 28(15):2084-2085
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** Marek, A; Nolte, V; Schachner, A; Berger, E; Schlötterer, C; Hess, M (2012): Two fiber genes of nearly equal lengths are a common and distinctive feature of Fowl adenovirus C members. Vet Microbiol. 2012; 156(3-4):411-417

** Orozco-terWengel, P; Kapun, M; Nolte, V; Kofler, R; Flatt, T; Schlötterer, C (2012): Adaptation of Drosophila to a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles. Mol Ecol. 2012; 21(20):4931-4941
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** Palmieri, N; Nolte, V; Suvorov, A; Kosiol, C; Schlötterer, C (2012): Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura. PLoS One. 2012; 7(10):e46415
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** Posnien, N; Hopfen, C; Hilbrant, M; Ramos-Womack, M; Murat, S; Schönauer, A; Herbert, SL; Nunes, MD; Arif, S; Breuker, CJ; Schlötterer, C; Mitteroecker, P; McGregor, AP (2012): Evolution of eye morphology and rhodopsin expression in the Drosophila melanogaster species subgroup. PLoS One. 2012; 7(5):e37346
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** Schwarzenbacher, H; Dolezal, M; Flisikowski, K; Seefried, F; Wurmser, C; Schlötterer, C; Fries, R (2012): Combining evidence of selection with association analysis increases power to detect regions influencing complex traits in dairy cattle. BMC Genomics. 2012; 13:48
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Publizierter (zitierfähiger) Beitrag für wissenschaftliche Veranstaltung in Proceedings (A2)

Marek, A; Kosiol, C; Schlötterer, C; Hess, M (2012): The first complete genome sequence of a fowl adenovirus B. 95--IX International Congress of Veterinary Virology; Sep 4-7, 2012; Madrid, Spain.

Marek, A; Nolte, V; Kosiol, C; Schlötterer, C; Hess, M (2012): Sequencing of whole genomes of fowl adenoviruses by Illumina sequencing and consequences for diagnostics. 60--10th International Adenovirus Meeting; Jun 13-17, 2012; Umea, Sweden.

Schlötterer, C (2012): Zukünftige Entwicklungen bei der Genomsequenzierung. 315-315.-Gemeinsames Symposium der Deutschen Akademie der Naturforscher Leopoldina und der Österreichischen Akademie der Wissenschaften (ÖAW); Mar 10-12, 2010; Wien, Austria. IN: Das "gläserne" Tier: Ein- und Ausblicke in Genome und Gene von Haustieren. Nova Acta Leopoldina 388; (ISBN: 978-3-8047-3028-1 )

Schwarzenbacher, H; Dolezal, M; Schlötterer, C; Fries, R (2012): "Hitchhiking mapping" - ein neuer Ansatz zur Kartierung von QTLs in Rinderpopulationen. 323-324.-Gemeinsames Symposium der Deutschen Akademie der Naturforscher Leopoldina und der Österreichischen Akademie der Wissenschaften (ÖAW); Mar 10-12, 2010; Wien, Austria. IN: Das "gläserne" Tier: Ein- und Ausblicke in Genome und Gene von Haustieren. Nova Acta Leopoldina 388; (ISBN: 978-3-8047-3028-1 )

2011

Zeitschriftenaufsatz

** Charruau, P; Fernandes, C; Orozco-Terwengel, P; Peters, J; Hunter, L; Ziaie, H; Jourabchian, A; Jowkar, H; Schaller, G; Ostrowski, S; Vercammen, P; Grange, T; Schlötterer, C; Kotze, A; Geigl, EM [and 2 others] (2011): Phylogeography, genetic structure and population divergence time of cheetahs in Africa and Asia: evidence for long-term geographic isolates. Mol Ecol. 2011; 20(4):706-724
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** Debat, V; Bloyer, S; Faradji, F; Gidaszewski, N; Navarro, N; Orozco-Terwengel, P; Ribeiro, V; Schlötterer, C; Deutsch, JS; Peronnet, F (2011): Developmental stability: a major role for cyclin G in drosophila melanogaster. PLoS Genet. 2011; 7(10):e1002314
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** Farlow, A; Meduri, E; Schlötterer, C (2011): DNA double-strand break repair and the evolution of intron density. Trends Genet. 2011; 27(1):1-6
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** Gibert, JM; Karch, F; Schlötterer, C (2011): Segregating variation in the polycomb group gene cramped alters the effect of temperature on multiple traits. PLoS Genet. 2011; 7(1):e1001280
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** Kofler, R; Orozco-terWengel, P; De Maio, N; Pandey, RV; Nolte, V; Futschik, A; Kosiol, C; Schlötterer, C (2011): PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals. PLoS One. 2011; 6(1):e15925
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** Kofler, R; Pandey, RV; Schlötterer, C (2011): PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq). Bioinformatics. 2011; 27(24):3435-3436
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** Lin, K; Li, H; Schlötterer, C; Futschik, A (2011): Distinguishing positive selection from neutral evolution: boosting the performance of summary statistics. Genetics. 2011; 187(1):229-244
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** Orozco-terWengel, P; Corander, J; Schlötterer, C (2011): Genealogical lineage sorting leads to significant, but incorrect Bayesian multilocus inference of population structure. Mol Ecol. 2011; 20(6):1108-1121
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** Pandey, RV; Kofler, R; Orozco-terWengel, P; Nolte, V; Schlötterer, C (2011): PoPoolation DB: a user-friendly web-based database for the retrieval of natural polymorphisms in Drosophila. BMC Genet. 2011; 12:27
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** Pandey, RV; Nolte, V; Boenigk, J; Schlötterer, C (2011): CANGS DB: a stand-alone web-based database tool for processing, managing and analyzing 454 data in biodiversity studies. BMC Res Notes. 2011; 4:227
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** Reis, M; Vieira, CP; Morales-Hojas, R; Aguiar, B; Rocha, H; Schlötterer, C; Vieira, J (2011): A comparative study of the short term cold resistance response in distantly related Drosophila species: the role of regucalcin and frost. PLoS One. 2011; 6(10):e25520
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** Schäfer, MA; Routtu, J; Vieira, J; Hoikkala, A; Ritchie, MG; Schlötterer, C (2011): Multiple quantitative trait loci influence intra-specific variation in genital morphology between phylogenetically distinct lines of Drosophila montana. J Evol Biol. 2011; 24(9):1879-1886

Publizierter (zitierfähiger) Beitrag für wissenschaftliche Veranstaltung in Proceedings (A2)

Farlow, A; Meduri, E; Schlötterer, C (2011): DNA double-strand break repair and the evolution of intron density. -The 44th Population Genetics Group Meeting; JAN 6, 2011; Hull, UK.

Kapun, M; Orozco, P; Nolte, V; Kofler, R; Schlötterer, C (2011): Experimental evolution in Drosophila: Whole genome surveys for traces of adaptation. -2nd NGS Mini Symposium; NOV, 28, 2011; Vienna, Austria.

Nolte, V; Pandey, RV; Kofler, R; Schlötterer, C (2011): Natural variation on a genomic scale in Drosophila mauritiana. -XIIIth ESEB Congress; AUG 20-25, 2011; Tuebingen, Germany.

Orozco terWengel, P; Kapun, M; Kofler, R; Pandey, RV; Nolte, V; Schlötterer, C (2011): Genomewide signatures of adaptation in Drosophila melanogaster. -44th Population Genetics Group Meeting; JAN, 6, 2011; Hull, UK.

Schlötterer, C (2011): The genomic architecture of adaptation to a novel environment. -Manchaster Molecular and Genome Evolution Symposium II; MAI 13, 2011; Manchaster.

Schlötterer, C; Kofler, R; Orozco ter Wengel, P; De Maio, N; Vinay Panday, R; Nolte, V; Futschik, A; Kosiol, C (2011): PoPoolation: a toolbox for population genetic analysis of 2nd generation sequencing data from pooled individuals. -Drosophila Research Conference; Mär 30-Apr 3, 2011; San Diego.

Schlötterer, C; Orozco Ter Wengel, P; Kapun, M; Kofler R; Nolte, V (2011): Genetic architecture ao adaption to a novel environment from standing genetic variation. -Drosophila Research Conference; Mär 30 - Apr 3, 2011; San Diego.

2010

Zeitschriftenaufsatz

** Farlow, A; Meduri, E; Dolezal, M; Hua, L; Schlötterer, C (2010): Nonsense-mediated decay enables intron gain in Drosophila. PLoS Genet. 2010; 6(1):e1000819
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** Futschik, A; Schlötterer, C (2010): The next generation of molecular markers from massively parallel sequencing of pooled DNA samples. Genetics. 2010; 186(1):207-218
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** Kapun, M; Nolte, V; Flatt, T; Schlötterer, C (2010): Host range and specificity of the Drosophila C virus. PLoS One. 2010; 5(8):e12421
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** Medinger, R; Nolte, V; Pandey, RV; Jost, S; Ottenwälder, B; Schlötterer, C; Boenigk, J (2010): Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms. Mol Ecol. 2010; 19 Suppl 1:32-40
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** Metta, M; Schlötterer, C (2010): Non-random genomic integration - an intrinsic property of retrogenes in Drosophila? BMC Evol Biol. 2010; 10:114
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** Nolte, V; Pandey, RV; Jost, S; Medinger, R; Ottenwälder, B; Boenigk, J; Schlötterer, C (2010): Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity. Mol Ecol. 2010; 19(14):2908-2915
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** Nunes, MD; Wengel, PO; Kreissl, M; Schlötterer, C (2010): Multiple hybridization events between Drosophila simulans and Drosophila mauritiana are supported by mtDNA introgression. Mol Ecol. 2010; 19(21):4695-4707
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** Pandey, RV; Nolte, V; Schlötterer, C (2010): CANGS: a user-friendly utility for processing and analyzing 454 GS-FLX data in biodiversity studies. BMC Res Notes. 2010; 3:3
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** Schäfer, MA; Mazzi, D; Klappert, K; Kauranen, H; Vieira, J; Hoikkala, A; Ritchie, MG; Schlötterer, C (2010): A microsatellite linkage map for Drosophila montana shows large variation in recombination rates, and a courtship song trait maps to an area of low recombination. J Evol Biol. 2010; 23(3):518-527

Publizierter (zitierfähiger) Beitrag für wissenschaftliche Veranstaltung in Proceedings (A2)

Charruau, P; Orozco-terWengel, P; Walzer, C; Nowotny, N; Schlötterer, C; Burger, P (2010): Mitochondrial evidence of panmixia in the global population of Camelus dromedarius. -SMBE; JULY 4-8, 2010; Lyon, Rhône, FRANCE.

De Maio, N; Kosiol, C; Kofler, R; Kapun, M; Orozco-terWengel, P; Nolte, V; Futschik, A; Schlötterer, C (2010): Estimation of population genetic parameters from pooled sequencing data of Drosophila species. -Statistical Challenges Arising from Genome Resequencing; JULY 13-16, 2010; Isaac Newton Institute for Mathematical Sciences, Cambridge, UNITED KINGDOM.

Hallay, N; Palmieri, N; Stöbe, P; McGregor, AP; Schlötterer, C (2010): Identification and composition of Polycomb Response Elements (PREs) in characterization of natural variations in motif Drosophila populations. -Epigenetic Regulation in Cell Fate & Disease; MAR 17-19, 2010; Institute of Molecular Pathology (IMP), Vienna, AUSTRIA.

Hopfen, C; Ramos-Womack, M; Murat, S; Posnien, N; Nunes, DM; Schönauer, A; Schlötterer, C; Stern, DL; Mitteröcker P; McGregor, A (2010): In the eye of the beholder: Investigating the evolution of differences in eye morphology within and between Drosophila species. -3rd Meeting of the European Society for Evolutionray Developmental Biology; JULY 6-9, 2010; Paris, FRANCE.

Kapun, M; Orozco, P; Kofler, R; Nolte, V; Schlötterer, C (2010): Identification of genes associated with adaptation to temperature: An experimental evolution approach in Drosophila simulans. -SMBE 2010; July 4-8, 2010; Lyon, FRANCE.

Kapun, M; Orozco, P; Kofler R; Nolte, V; Schlötterer, C (2010): Experimental evolution of temperature adaption in Drosophila simulans. -Mind the Gap 2010; SEP 22-24, 2010; Ploen, Germany.

Kofler, R; Pandey, RV; deMaio, N; Nolte, V; Orozco-terWengel, P; Kapun, M; Schlötterer, C (2010): PoPoolation: A Pipeline For Analysing DNA Pools of Populations Using Next Generation Sequencing. -SMBE-Lyon; JUL 4-8, 2010; Lyon.

Schlötterer, C (2010): Next generation sequencing in population genetics: From experimental evolution to gene expression. -Arthropod Genomics: New Approaches and Outcomes; JUN 10-13, 2010; Kansas City.

2009

Zeitschriftenaufsatz

** Boitard, S; Schlötterer, C; Futschik, A (2009): Detecting selective sweeps: a new approach based on hidden markov models. Genetics. 2009; 181(4):1567-1578
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** Hilscher, J; Schlötterer, C; Hauser, MT (2009): A single amino acid replacement in ETC2 shapes trichome patterning in natural Arabidopsis populations. Curr Biol. 2009; 19(20):1747-1751
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** Kofler, R; Teixeira Torres, T; Lelley, T; Schlötterer, C (2009): PanGEA: identification of allele specific gene expression using the 454 technology. BMC Bioinformatics. 2009; 10:143
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** Palmieri, N; Schlötterer, C (2009): Mapping accuracy of short reads from massively parallel sequencing and the implications for quantitative expression profiling. PLoS One. 2009; 4(7):e6323
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** Torres, TT; Dolezal, M; Schlötterer, C; Ottenwälder, B (2009): Expression profiling of Drosophila mitochondrial genes via deep mRNA sequencing. Nucleic Acids Res. 2009; 37(22):7509-7518
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Publizierter (zitierfähiger) Beitrag für wissenschaftliche Veranstaltung in Proceedings (A2)

Schlötterer, C (2009): No-random genomic integration-an intrinsic property of retrogenes in Drosophila. -50th Annual Drosophila Research Conference; MAR 4-8, 2009; Chicago, USA.

Schlötterer, C (2009): Functional tests of selected alleles - a case study in Drosophila. -Conservation Genetics & Thermal Adaptation Workshop; JUNE 29 - JULY 1, 2009; Bialowieza, POLAND.

Schlötterer, C (2009): Genome scans for detecting signatures of natural selection. -Evoltree 3rd Annual Meeting; FEB 2-6, 2009; Baden, AUSTRIA.

2008

Zeitschriftenaufsatz

** Huttunen, S; Aspi, J; Schlötterer, C; Routtu, J; Hoikkala, A (2008): Variation in male courtship song traits in Drosophila virilis: the effects of selection and drift on song divergence at the intraspecific level. Behav Genet. 2008; 38(1):82-92

** Kofler, R; Schlötterer, C; Luschützky, E; Lelley, T (2008): Survey of microsatellite clustering in eight fully sequenced species sheds light on the origin of compound microsatellites. BMC Genomics. 2008; 9:612
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** McAllister, BF; Sheeley, SL; Mena, PA; Evans, AL; Schlötterer, C (2008): Clinal distribution of a chromosomal rearrangement: a precursor to chromosomal speciation? Evolution. 2008; 62(8):1852-1865

** Metta, M; Schlötterer, C (2008): Male-biased genes are overrepresented among novel Drosophila pseudoobscura sex-biased genes. BMC Evol Biol. 2008; 8:182
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** Nolte, V; Schlötterer, C (2008): African Drosophila melanogaster and D. simulans populations have similar levels of sequence variability, suggesting comparable effective population sizes. Genetics. 2008; 178(1):405-412
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** Nolte, V; Weigel, D; Schlötterer, C (2008): The impact of shared ancestral variation on hybrid male lethality--a 16 codon indel in the Drosophila simulans Lhr gene. J Evol Biol. 2008; 21(2):551-555

** Nunes, MD; Neumeier, H; Schlötterer, C (2008): Contrasting patterns of natural variation in global Drosophila melanogaster populations. Mol Ecol. 2008; 17(20):4470-4479

** Nunes, MD; Nolte, V; Schlötterer, C (2008): Nonrandom Wolbachia infection status of Drosophila melanogaster strains with different mtDNA haplotypes. Mol Biol Evol. 2008; 25(11):2493-2498
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** Schlötterer, C (2008): Drosophila unleashed: the 12-genome update of the genetic power horse has been released. Heredity (Edinb). 2008; 100(4):337-338
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** Schlötterer, C (2008): Drosophila unleashed: the 12-genome update of the genetic power horse has been released (vol 100, pg 337, 2008). Heredity (100), 4 440-440.

** Torres, TT; Metta, M; Ottenwälder, B; Schlötterer, C (2008): Gene expression profiling by massively parallel sequencing. Genome Res. 2008; 18(1):172-177
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Publizierter (zitierfähiger) Beitrag für wissenschaftliche Veranstaltung in Proceedings (A2)

Meduri, E; Schlötterer, C (2008): Intron Evolution in Drosophila. -European Conference on Computational Biology ; Sept 22-26, 2008; Cagliari, Italy.

Schlötterer, C (2008): Detecting selective sweeps using HMM. -49th annual Drosophila research conference ; April 2-6, 2008; San Diego, USA.

Schlötterer, C (2008): Gene expression profiling by massively parallel sequencing. -49th annual Drosophila research conference ; April 2-6, 2008; San Diego, USA.

2007

Zeitschriftenaufsatz

** Gibert, JM; Peronnet, F; Schlötterer, C (2007): Phenotypic plasticity in Drosophila pigmentation caused by temperature sensitivity of a chromatin regulator network. PLoS Genet. 2007; 3(2):e30
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** Kofler, R; Schlötterer, C; Lelley, T (2007): SciRoKo: a new tool for whole genome microsatellite search and investigation. Bioinformatics. 2007; 23(13):1683-1685
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** Mirol, PM; Schäfer, MA; Orsini, L; Routtu, J; Schlötterer, C; Hoikkala, A; Butlin, RK (2007): Phylogeographic patterns in Drosophila montana. Mol Ecol. 2007; 16(5):1085-1097

** Wiehe, T; Nolte, V; Zivkovic, D; Schlötterer, C (2007): Identification of selective sweeps using a dynamically adjusted number of linked microsatellites. Genetics. 2007; 175(1):207-218
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Publizierter (zitierfähiger) Beitrag für wissenschaftliche Veranstaltung in Proceedings (A2)

Nunes, MD; Schlötterer, C (2007): No evidence for recombination in D. melanogaster mtDNA, despite high level of diversity and heteroplasmy. -11th Congress of the European Society of Evolutionary Biology ; Aug 20-25, 2007; Uppsala, Sweden .

Nunes, MD; Schlötterer, C (2007): No evidence for recombination in D. melanogaster mtDNA, despite high level of diversity and heteroplasmy. -20th European Drosophila Research Conference ; Sept 12-14, 2007; Vienna, Austria.

Orozco, P; Schlötterer, C (2007): Chromosomal evidence for historical patterns of differentiation in Drosophila melanogaster. -20th European Drosophila Research Conference ; Sept 12-14, 2007; Vienna, Austria.

Schlötterer, C; Santos-Nunes, D (2007): Evidence for widespread heteroplasmy and recombination of mtDNA in D. melanogaster. -48th Annual Drosophila Research Conference; 7.-11.03.2007; Philadelphia Marriott Hotel in Philadelphia, Pennsylvania.

2006

Zeitschriftenaufsatz

** Harr, B; Schlötterer, C (2006): Comparison of algorithms for the analysis of Affymetrix microarray data as evaluated by co-expression of genes in known operons. Nucleic Acids Res. 2006; 34(2):e8
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** Harr, B; Schlötterer, C (2006): Gene expression analysis indicates extensive genotype-specific crosstalk between the conjugative F-plasmid and the E. coli chromosome. BMC Microbiol. 2006; 6:80
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** Imhof, M; Schlötterer, C (2006): E. coli microcosms indicate a tight link between predictability of ecosystem dynamics and diversity. PLoS Genet. 2006; 2(7):e103
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** Metta, M; Gudavalli, R; Gibert, JM; Schlötterer, C (2006): No accelerated rate of protein evolution in male-biased Drosophila pseudoobscura genes. Genetics. 2006; 174(1):411-420
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** Muir, G; Schlötterer, C (2006): Moving beyond single-locus studies to characterize hybridization between oaks (Quercus spp.). Mol Ecol. 2006; 15(8):2301-2304

** Pidugu, SR; Schlötterer, C (2006): ms2ms.pl - a Perl Script for generating microsatellite data. Molecular Ecology Notes (6) 580-581.

** Schäfer, MA; Orsini, L; McAllister, BF; Schlötterer, C (2006): Patterns of microsatellite variation through a transition zone of a chromosomal cline in Drosophila americana. Heredity (Edinb). 2006; 97(4):291-295
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** Schlötterer, C; Imhof, M; Wang, H; Nolte, V; Harr, B (2006): Low abundance of Escherichia coli microsatellites is associated with an extremely low mutation rate. J Evol Biol. 2006; 19(5):1671-1676

** Schlötterer, C; Neumeier, H; Sousa, C; Nolte, V (2006): Highly structured Asian Drosophila melanogaster populations: a new tool for hitchhiking mapping? Genetics. 2006; 172(1):287-292
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** Schöfl, G; Schlötterer, C (2006): Microsatellite variation and differentiation in African and non-African populations of Drosophila simulans. Mol Ecol. 2006; 15(13):3895-3905

** Tero, N; Neumeier, H; Gudavalli, R; Schlötterer, C (2006): Silene tatarica microsatellites are frequently located in repetitive DNA. J Evol Biol. 2006; 19(5):1612-1619

Eckert, D; Klamler, C; Mitlöhner, J; Schlötterer, C (2006): A distance-based comparison of basic voting rules. Central European Journal of Operations Research (14) 377-386.

Publizierter (zitierfähiger) Beitrag für wissenschaftliche Veranstaltung in Proceedings (A2)

Metta, M; Schlötterer, C (2006): Fast evolving protein binding gene CG15893 in Drosphila. EMBO Practical course on Statistical methods for identifying genes under natural selection, Helsinki, 15.-19.05.2006. EMBO Practical course on Statistical methods for identifying genes under natural selection, Helsinki, 15.-19.05.2006.

Metta, M; Schlötterer, C (2006): Novel sex biased genes in D. pseudoobscura indentified by Sage. EMBO Young Investigator Program PhD Course, Heidelberg, 17.-24.09.2006. EMBO Young Investigator Program PhD Course, Heidelberg, 17.-24.09.2006.

Orozco-terWengel, P; Schlötterer, C (2006): Discrepant patterns of population clustering along & betwenn chromosomes in Drosophila melanogaster. Advances in molecular evolutionary ecology: Statistical tools to unravel evolutionary processes in natural populations, Tutzing, 27.11.-01.12.2006. Advances in molecular evolutionary ecology: Statistical tools to unravel evolutionary processes in natural populations, Tutzing, 27.11.-01.12.2006.

Walzer, C; Silbermayr, K; Burger, P; Schlötterer, C; Vogel, C; Schwarzenberger, F (2006): Genetic diversity and introgression in the Mongolian wild Bactrian camel (Camelus bactrianus ferus): conceptual design. -International Workshop on Conservation andManagement of the Wild Bactrian Camel; OCT 12–14, 2006; Ulaanbaatar, Mongolia.

Originalbeitrag in Sammelwerk

Schlötterer, C (2006): Hitchhiking mapping: limitations and potential for the identification of ecologically important genes. IN: Eisenhaber, F [Hrsg.]: Discovering biomolecular mechanisms with computational biology. Austin, Tex., Landes Bioscience, pp. 117-125.

2005

Zeitschriftenaufsatz

** Catania, F; Schlötterer, C (2005): Non-African origin of a local beneficial mutation in D. melanogaster. Mol Biol Evol. 2005; 22(2):265-272
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** Dieringer, D; Nolte, V; Schlötterer, C (2005): Population structure in African Drosophila melanogaster revealed by microsatellite analysis. Mol Ecol. 2005; 14(2):563-573

** Gibert, JM; Marcellini, S; David, JR; Schlötterer, C; Simpson, P (2005): A major bristle QTL from a selected population of Drosophila uncovers the zinc-finger transcription factor poils-au-dos, a repressor of achaete-scute. Dev Biol. 2005; 288(1):194-205
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** Haase, B; Schlötterer, C; Hundrieser, ME; Kuiper, H; Distl, O; Töpfer-Petersen, E; Leeb, T (2005): Evolution of the spermadhesin gene family. Gene. 2005; 352:20-29

** Muir, G; Schlötterer, C (2005): Evidence for shared ancestral polymorphism rather than recurrent gene flow at microsatellite loci differentiating two hybridizing oaks (Quercus spp.). Mol Ecol. 2005; 14(2):549-561

** Schlötterer, C; Reiss, M; Schneider, A; Imhof, M (2005): Similar mating and sperm displacement patterns in two highly divergent D. simulans populations from Africa and Europe. Mol Ecol. 2005; 14(5):1511-1515

** Schöfl, G; Catania, F; Nolte, V; Schlötterer, C (2005): African sequence variation accounts for most of the sequence polymorphism in non-African Drosophila melanogaster. Genetics. 2005; 170(4):1701-1709
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** Tero, N; Schlotterer, C (2005): Isolation and characterization of microsatellite loci from Silene tatarica. Mol Ecol Notes 2005; 5(3): 517-518.

2004

** Catania, F; Kauer, MO; Daborn, PJ; Yen, JL; Ffrench-Constant, RH; Schlotterer, C (2004): World-wide survey of an Accord insertion and its association with DDT resistance in Drosophila melanogaster. Mol Ecol. 2004; 13(8):2491-2504

** Harr, B; Schlötterer, C (2004): Patterns of microsatellite variability in the Drosophila melanogaster complex. Genetica. 2004; 120(1-3):71-77

** Huttunen, S; Aspi, J; Hoikkala, A; Schlötterer, C (2004): QTL analysis of variation in male courtship song characters in Drosophila virilis. Heredity (Edinb). 2004; 92(3):263-269
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** Kauer, MO; Schlötterer, C (2004): An analysis of genetic differentiation among assortatively mating Drosophila melanogaster in Zimbabwe. J Evol Biol. 2004; 17(3):493-500

** Orsini, L; Huttunen, S; Schlötterer, C (2004): A multilocus microsatellite phylogeny of the Drosophila virilis group. Heredity (Edinb). 2004; 93(2):161-165
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** Orsini, L; Schlötterer, C (2004): Isolation and characterization of microsatellites in Drosophila montana and their cross-species amplification in D-virilis. Mol Ecol Notes (4), 3 412-414.

** Schlötterer, C (2004): The evolution of molecular markers--just a matter of fashion? Nat Rev Genet. 2004; 5(1):63-69

** Schlötterer, C; Kauer, M; Dieringer, D (2004): Allele excess at neutrally evolving microsatellites and the implications for tests of neutrality. Proc Biol Sci (271), 1541 869-874.
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** Schöfl, G; Schlötterer, C (2004): Patterns of microsatellite variability among X chromosomes and autosomes indicate a high frequency of beneficial mutations in non-African D. simulans. Mol Biol Evol. 2004; 21(7):1384-1390
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2003

** Caracristi, G; Schlötterer, C (2003): Genetic differentiation between American and European Drosophila melanogaster populations could be attributed to admixture of African alleles. Mol Biol Evol. 2003; 20(5):792-799
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** Dieringer, D; Schlötterer, C (2003): Two distinct modes of microsatellite mutation processes: evidence from the complete genomic sequences of nine species. Genome Res. 2003; 13(10):2242-2251
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** Dieringer, D; Schlötterer, C (2003): Microsatellite analyzer (MSA) - a platform independent analysis tool for large microsatellite data sets. Molecular Ecology Notes (3) 167-169.

** Kauer, MO; Dieringer, D; Schlötterer, C (2003): A microsatellite variability screen for positive selection associated with the "out of Africa" habitat expansion of Drosophila melanogaster. Genetics (165), 3 1137-1148.
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** Schlotterer, C (2003): Genetics. Where do male genes live? Science. 2003; 299(5607):670-671

** Schlötterer, C (2003): Hitchhiking mapping--functional genomics from the population genetics perspective. Trends Genet. 2003; 19(1):32-38

2002

** Harr, B; Kauer, M; Schlötterer, C (2002): Hitchhiking mapping: a population-based fine-mapping strategy for adaptive mutations in Drosophilamelanogaster. Proc Natl Acad Sci U S A. 2002; 99(20):12949-12954
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** Harr, B; Kauer, M; Schlötterer, C (2002): Hitchhiking mapping: A population-based fine-mapping strategy for adaptive mutations in Drosophila melanogaster (vol 99, pg 12949, 2002). Proc Nat Acad Sci USA (100), 5 3004-3004.

** Harr, B; Todorova, J; Schlötterer, C (2002): Mismatch repair-driven mutational bias in D. melanogaster. Mol Cell. 2002; 10(1):199-205
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** Huttunen, S; Schlötterer, C (2002): Isolation and characterization of microsatellites in D. virilis and their cross species amplification in members of the D. virilis group. Molecular Ecology Notes (2) 593-597.

** Kauer, M; Zangerl, B; Dieringer, D; Schlötterer, C (2002): Chromosomal patterns of microsatellite variability contrast sharply in African and non-African populations of Drosophila melanogaster. Genetics. 2002; 160(1):247-256 Open Access Logo

** Koskinen, MT; Knizhin, I; Primmer, CR; Schlötterer, C; Weiss, S (2002): Mitochondrial and nuclear DNA phylogeography of Thymallus spp (grayling) provides evidence of ice-age mediated environmental perturbations in the world"s oldest body of fresh water, Lake Baikal. Mol Ecol. 2002; 11(12):2599-2611

** Schlötterer, C (2002): A microsatellite-based multilocus screen for the identification of local selective sweeps. Genetics. 2002; 160(2):753-763 Open Access Logo

** Schlötterer, C (2002): Towards a molecular characterization of adaptation in local populations. Curr Opin Genet Dev. 2002; 12(6):683-687

** Schlötterer, C; Agis, M (2002): Microsatellite analysis of Drosophila melanogaster populations along a microclimatic contrast at lower Nahel Oren canyon, Mount Carmel, Israel. Mol Biol Evol. 2002; 19(4):563-568 Open Access Logo

** Schlötterer, C; Harr, B (2002): Single nucleotide polymorphisms derived from ancestral populations show no evidence for biased diversity estimates in Drosophila melanogaster. Mol Ecol. 2002; 11(5):947-950

** Weiss, S; Persat, H; Eppe, R; Schlötterer, C; Uiblein, F (2002): Complex patterns of colonization and refugia revealed for European grayling Thymallus thymallus, based on complete sequencing of the mitochondrial DNA control region. Mol Ecol. 2002; 11(8):1393-1407

** Zwettler, D; Vieira, CP; Schlötterer, C (2002): Polymorphic microsatellites in Antirrhinum (Scrophulariaceae), a genus with low levels of nuclear sequence variability. J Hered. 2002; 93(3):217-221
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2001

** Agis, M; Schlötterer, C (2001): Microsatellite variation in natural Drosophila melanogaster populations from New South Wales (Australia) and Tasmania. Mol Ecol. 2001; 10(5):1197-1205

** Hauser, MT; Harr, B; Schlötterer, C (2001): Trichome distribution in Arabidopsis thaliana and its close relative Arabidopsis lyrata: molecular analysis of the candidate gene GLABROUS1. Mol Biol Evol. 2001; 18(9):1754-1763 Open Access Logo

** Imhof, M; Schlotterer, C (2001): Fitness effects of advantageous mutations in evolving Escherichia coli populations. Proc Natl Acad Sci U S A. 2001; 98(3):1113-1117
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** Muir, G; Fleming, CC; Schlötterer, C (2001): Three divergent rDNA clusters predate the species divergence in Quercus petraea (Matt.) Liebl. and Quercus robur L. Mol Biol Evol. 2001; 18(2):112-119 Open Access Logo

** Schlötterer, C (2001): Genealogical inference of closely related species based on microsatellites. Genet Res. 2001; 78(3):209-212

** Weiss, S; Schlötterer, C; Waidbacher, H; Jungwirth, M (2001): Haplotype (mtDNA) diversity of brown trout Salmo trutta in tributaries of the Austrian Danube: massive introgression of Atlantic basin fish--by man or nature? Mol Ecol. 2001; 10(5):1241-1246

2000

** Bachtrog, D; Agis, M; Imhof, M; Schlötterer, C (2000): Microsatellite variability differs between dinucleotide repeat motifs-evidence from Drosophila melanogaster. Mol Biol Evol (17), 9 1277-1285.
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** Hanslik, S; Harr, B; Brem, G; Schlötterer, C (2000): Microsatellite analysis reveals substantial genetic differentiation between contemporary New World and Old World Holstein Friesian populations. Anim Genet. 2000; 31(1):31-38

** Harr, B; Schlötterer, C (2000): Long microsatellite alleles in Drosophila melanogaster have a downward mutation bias and short persistence times, which cause their genome-wide underrepresentation. Genetics. 2000; 155(3):1213-1220 Open Access Logo

** Harr, B; Zangerl, B; Schlötterer, C (2000): Removal of microsatellite interruptions by DNA replication slippage: phylogenetic evidence from Drosophila. Mol Biol Evol. 2000; 17(7):1001-1009 Open Access Logo

** Martin, Y; Gerlach, G; Schlötterer, C; Meyer, A (2000): Molecular phylogeny of European muroid rodents based on complete cytochrome b sequences. Mol Phylogenet Evol. 2000; 16(1):37-47

** Mayer, F; Schlötterer, C; Tautz, D (2000): Polymorphic microsatellite loci in vespertilionid bats isolated from the noctule bat Nyctalus noctula. Mol Ecol. 2000; 9(12):2208-2212

** Muir, G; Fleming, CC; Schlötterer, C (2000): Species status of hybridizing oaks. Nature. 2000; 405(6790):1016

** Schlötterer, C (2000): Evolutionary dynamics of microsatellite DNA. Chromosoma. 2000; 109(6):365-371

** Schlötterer, C (2000): Microsatellite analysis indicates genetic differentiation of the neo-sex chromosomes in Drosophila americana americana. Heredity (Edinb). 2000; 85(Pt 6):610-616

** Schlötterer, C; Harr, B (2000): Drosophila virilis has long and highly polymorphic microsatellites. Mol Biol Evol. 2000; 17(11):1641-1646 Open Access Logo

** Weiss, S; Antunes, A; Schlötterer, C; Alexandrino, P (2000): Mitochondrial haplotype diversity among Portuguese brown trout Salmo trutta L. populations: relevance to the post-pleistocene recolonization of northern Europe. Mol Ecol. 2000; 9(6):691-698

1999

** Bachtrog, D; Weiss, S; Zangerl, B; Brem, G; Schlötterer, C (1999): Distribution of dinucleotide microsatellites in the Drosophila melanogaster genome. Mol Biol Evol (16), 5 602-610.
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1998

** Harr, B; Weiss, S; David, JR; Brem, G; Schlötterer, C (1998): A microsatellite-based multilocus phylogeny of the Drosophila melanogaster species complex. Curr Biol (8), 21 1183-1186.

** Harr, B; Zangerl, B; Brem, G; Schlötterer, C (1998): Conservation of locus-specific microsatellite variability across species: a comparison of two Drosophila sibling species, D. melanogaster and D. simulans. Mol Biol Evol (15), 2 176-184.
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** Imhof, M; Harr, B; Brem, G; Schlötterer, C (1998): Multiple mating in wild Drosophila melanogaster revisited by microsatellite analysis. Mol Ecol (7), 7 915-917.

** Schlötterer, C (1998): Genome evolution: are microsatellites really simple sequences?. Curr Biol (8), 4 R132-R134.

** Schlötterer, C; Ritter, R; Harr, B; Brem, G (1998): High mutation rate of a long microsatellite allele in Drosophila melanogaster provides evidence for allele-specific mutation rates. Mol Biol Evol (15), 10 1269-1274.
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** Schlötterer, C; Vogl, C; Tautz, D (1998): "Polymorphism and locus-specific effects on polymorphism at microsatellite loci in natural Drosophila melanogaster populations" (vol 146, pg 309 1997). Genetics (149), 3 1627-1627.

1997

** Gockel, J; Harr, B; Schlötterer, C; Arnold, W; Gerlach, G; Tautz, D (1997): Isolation and characterization of microsatellite loci from Apodemus flavicollis (rodentia, muridae) and Clethrionomys glareolus (rodentia, cricetidae). Mol Ecol. 1997; 6(6):597-599

** Schlötterer, C; Vogl, C; Tautz, D (1997): Polymorphism and locus-specific effects on polymorphism at microsatellite loci in natural Drosophila melanogaster populations. Genetics (146), 1 309-320.
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1996

** Schlötterer, C; Wolff, C (1996): M13mtvh: an improved M13 vector for rapid and simple cloning of PCR products. Trends Genet (12), 8 286-287.

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